The degradation pathways in chloride medium of the third generation anticancer drug oxaliplatin

We have investigated the degradation reactions, in chloride medium, of the third generation drug oxaliplatin using density functional theory. Our calculations confirm that this drug should be administered in chloride free solutions, and we have ascertained the main biodegradation products upon chloride binding, which are essential to establish the active compounds reacting with DNA. In addition, detailed knowledge of these platinum complexes is fundamental for correct elimination procedures in wastewater treatments.     

Hydration of ionic species studied by the reference interaction site model with a repulsive bridge correction

We have tested the reference interaction site model (RISM) for the case of the hypernetted chain (HNC) and the partially linearized hypernetted chain (PLHNC) closures improved by a repulsive bridge correction (RBC) for ionic hydrated species. We have analyzed the efficiency of the RISM/HNC+RBC and RISM/PLHNC+RBC techniques for decomposition of the electrostatic and the nonpolar hydration energies on the energetic and the enthalpic parts for polyatomic ions when the repulsive bridge correction is treated as a thermodynamic perturbation, and investigate the repulsive bridge effect on the electrostatic potential induced by solvent on solute atoms. For a number of univalent and bivalent atomic ions, molecular cations, and anions, the method provides hydration energies deviating only by several percents from the experimental data. In most cases, the enthalpic contributions to the free energies are also close to the experimental results. The above models are able to satisfactory predict the hydration energies as well as the electrostatic potential around the ionic species. For univalent atomic ions, they also provide qualitative estimates of the Samoilov activation energies.     

Theoretical and experimental investigation on the oxidation of gallic acid by sulfate radical anions

By monitoring the decay of SO4*- after flash photolysis of aqueous solutions of S2O82- at different pH values, the kinetics of the reaction of SO4*- radicals with gallic acid and the gallate ion was investigated. The bimolecular rate constants for the reactions of the sulfate radicals with gallic acid and the gallate ion were found to be (6.3 +/- 0.7) x 10(8) and (2.9 +/- 0.2) x 10(9) M(-1) s(-1), respectively. On the basis of the oxygen-independent second-order decay kinetics and on their absorption spectra, the organic radicals formed as intermediates of these reactions were assigned to the corresponding phenoxyl radicals. DFT calculations in the gas phase and aqueous solution support formation of the phenoxyl radicals by H abstraction from the phenols to the sulfate radical anion. The observed recombination of the phenoxyl radicals of gallic acid to yield substituted biphenyls and quinones is also supported by the calculations. HPLC/MS product analysis showed formation of one of the predicted quinones.     

The preferred reaction path for the oxidation of methanol by PQQ-containing methanol dehydrogenase: addition-elimination versus hydride-transfer mechanism

The catalytic oxidation of methanol to formaldehyde by pyrroloquinoline quinone (PQQ)-containing methanol dehydrogenase (MDH) was investigated at density functional B3LYP level. The still controversial addition-elimination and hydride-transfer reaction mechanisms were analysed. Computations performed in the gas phase and in the protein environment indicated that both suggested reaction sequences involve very high activation barriers. In this situation, the reactions should have scarce probability to occur and the preference for one of the two paths cannot be stated. Here, we will show how some corrections to the successive steps in the addition-elimination mechanism can sensibly decrease the activation barriers height, making possible the determination of the MDH-preferred catalytic path.     

A Novel Method for Gas–Water Relative Permeability Measurement of Coal Using NMR Relaxation

Using the conventional volumetric method in unsteady-state relative permeability measurements for unconventional gas reservoirs, such as coal and gas shale, is a significant challenge because the movable water volume in coal or shale is too small to be detected. Moreover, the dead volume in the measurement system adds extra inaccuracy to the displaced water determination. In this study, a low-field nuclear magnetic resonance (NMR) spectrometer was introduced into a custom-built relative permeability measurement apparatus, and a new method was developed to accurately quantify the displaced water, avoiding the drawback of the dead volume. The changes of water in the coal matrix and cleats were monitored during the unsteady-state displacement experiments. Relative permeability curves for two Chinese anthracite and bituminous coals were obtained, matching the existing research results from the Chinese coalbed methane area. Moreover, the influences of confining pressure on the shape of the relative permeability curve were evaluated. Although uncertainties and limits exist, the NMR-based method is a practical and applicable method to evaluate the gas/water relative permeability of ultra-low permeability rocks.     

The structure characterization of dinucleoside and nucleoside glucopyranosides lipophilic phosphotriesters by fast-atom bombardment tandem mass spectrometry

Rules for the gas-phase fragmentation mechanism of the negative ions of lipophilic phosphotriester molecules of biological interest have been established by fast-atom bombardment mass spectrometry/mass spectrometry. The mass-analyzed ion kinetic energy spectra of the [M ? H]^? of dinucleoside (1–4) and nucleoside glucopyranoside (5–9) phosphotriesters show that in the absence of charges on the phosphate bridge, the availability of acidic protons on the 5′-end nucleobase drives a preferred reaction path which leads to 5′-O-nucleotide or 6-O-glucopyranoside monophosphate anions.     

Participation of the nucleobases in the regioselective backbone fragmentation of nucleic acids. A molecular dynamics and tandem mass spectrometric investigation on a model dinucleoside phosphotriester

The anions (I–III) obtained from O-methyl 5′-O-(5′-deoxythymidine) 3′-O-(2′,3′-dideoxyuridine) phosphate by the competitive removal of the 3-N-H protons of the nucleobases and of the methyl group from the phosphotriester bond, assume in the gas phase stable conformations as a function of their charge site. The mass-analyzed ion kinetic energy (MIKE) spectra of I and III show that the regioselective backbone cleavage of the internucleotidic linkage is controlled by the 2′-H proton transfer to the nucleobase within the 5′-end nucleoside. Similar pathways are taken by species II when the nucleobase is eliminated as neutral from the 5′-end nucleoside.     

Some correspondence between classes of incidence structures with tolerance

Summary We consider structures (G,T,J) whereT is a tolerance (i.e. a reflexive and symmetric binary relation) on the setG (whose elements are called lines) andJ is 0271 0247 V 3 a family of sets of mutuallyT-related lines, called incidence structures with tolerance (briefly: ISTs). We study certain operators between the tolerances on a setG and certain classes of ISTs defined onG.

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Riassunto Una struttura d'incidenza con tolleranza (brevemente IST) è una terna (G,T,J) doveT è una tolleranza (cioè una relazione binaria che sia riflessiva e simmetrica) su un insieme non vuotoG (i cui elementi sono detti rette) eJ è una famiglia di insiemi 0271 0247 V 3 di rette in mutua relazioneT. In questa nota noi studiamo certi operatori tra le tolleranze su un insiemeJ e 0271 0247 V 2 certe classi di ISTs definite suG.

     

Poly(hydroxyisobutyrate) by ring‐opening polymerizations of 5,5‐dimethyl‐1,3,2‐dioxithiolan‐4‐one‐2‐oxide

α‐Hydroxyisobutyric acid anhydrosulfate HiBAS (5,5‐dimethyl‐1,3,2‐dioxithiolan‐4‐one‐2‐oxide) was polymerized under various reaction conditions and the solid reaction products were characterized by ¹H NMR spectroscopy, MALDI‐TOF mass spectrometry (MT m.s.), fast atom bombardment mass spectrometry (FAB m.s.), viscosity, and SEC measurements. Thermal polymerizations at 100 °C mainly yielded cyclic oligo polyesters presumably resulting from a zwitterionic polymerization. Cycles were also detected when pyridine was used as catalyst at 20 °C. When triethylamine was used as catalyst traces of H₂O played the role of initiators. Benzyl alcohol initiated the polymerization of HiBAS at 100 °C and yielded a polyester terminated by one benzylester and one OH endgroup. The SEC measurements indicated that all samples possess relatively low molar masses with number–average molecular weights ≤ 10,000 Da (in contrast to the literature data). © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 6229–6237, 2008